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Improved lab report edge case parsing

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Jiang Yio 2022-10-01 01:16:19 -04:00
parent c1ca4ea414
commit 7b4b9ae099
1 changed files with 5 additions and 1 deletions
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6
htdocs/reportparser.mjs
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@ -53,6 +53,10 @@ function lab_parse1default(data) {
else x.comment = [line.substring(12)]; else x.comment = [line.substring(12)];
} else console.log('DANGLING:', line); } else console.log('DANGLING:', line);
} else if(m = line.match(/^\b(?<name>.*?)\s{2,}(?<value>.*?)(?: (?<flag>L\*|L|H\*|H))?\s+(?:(?<unit>.{10}) (?<range>.*?)(?: \[(?<site>\d+)\])?)?$/)) { } else if(m = line.match(/^\b(?<name>.*?)\s{2,}(?<value>.*?)(?: (?<flag>L\*|L|H\*|H))?\s+(?:(?<unit>.{10}) (?<range>.*?)(?: \[(?<site>\d+)\])?)?$/)) {
if(m.groups.name.startsWith('COVID-19 SCR (CEPHEID-RAPID)')) {
m = line.substring(28).match(/^(?<value>.*?)(?: (?<flag>L\*|L|H\*|H))?\s+(?:(?<unit>.{10}) (?<range>.*?)(?: \[(?<site>\d+)\])?)?$/);
m.groups.name = 'COVID-19 SCR (CEPHEID-RAPID)';
}
if((m.groups.range) && (m.groups.range.startsWith('Ref: '))) m.groups.range = m.groups.range.substring(5); if((m.groups.range) && (m.groups.range.startsWith('Ref: '))) m.groups.range = m.groups.range.substring(5);
results.push(x = m.groups); results.push(x = m.groups);
if((x.value === '') && (m = x.name.match(/^(?<name>.*?)(?<value>(?:[\d\.]+|positive|negative|reactive|not detected|collected - specimen in lab|test not performed))\s*$/i))) { if((x.value === '') && (m = x.name.match(/^(?<name>.*?)(?<value>(?:[\d\.]+|positive|negative|reactive|not detected|collected - specimen in lab|test not performed))\s*$/i))) {
@ -60,7 +64,7 @@ function lab_parse1default(data) {
x.value = m.groups.value; x.value = m.groups.value;
} }
for(var k in x) if(x[k]) x[k] = x[k] ? x[k].replace(/^\s+|\s+$/g, '') : undefined; for(var k in x) if(x[k]) x[k] = x[k] ? x[k].replace(/^\s+|\s+$/g, '') : undefined;
} else if(m = line.match(/^\b(?<name>.*?) (?<value>(?:[\d\.]+|positive|negative|reactive|not detected|collected - specimen in lab|test not performed))\s*$/i)) { } else if(m = line.match(/^\b(?<name>.*?)(?<value>(?:[\d\.]+|positive|negative|reactive|not detected|collected - specimen in lab|test not performed))\s*$/i)) {
results.push(x = m.groups); results.push(x = m.groups);
for(var k in x) if(x[k]) x[k] = x[k] ? x[k].replace(/^\s+|\s+$/g, '') : undefined; for(var k in x) if(x[k]) x[k] = x[k] ? x[k].replace(/^\s+|\s+$/g, '') : undefined;
} else if(line.startsWith(' [')) { } else if(line.startsWith(' [')) {