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2 Commits
18d6b6f19c ... 46ef48b0ae

Author SHA1 Message Date
inportb
46ef48b0ae More robust lab report diff count normalization 2025-01-14 20:46:15 -05:00
inportb
1d276e7bec Improved lab report edge case parsing 2025-01-14 20:44:45 -05:00
1 changed files with 8 additions and 8 deletions

16
htdocs/reportparser.mjs

@ -53,15 +53,15 @@ function lab_parse1default(data) {
else x.comment = [line.substring(12)];
} else console.log('DANGLING:', line);
} else if(m = line.match(/^\b(?<name>.*?)\s{2,}(?<value>.*?)(?: (?<flag>L\*|L|H\*|H))?\s+(?:(?<unit>.{10}) (?<range>.*?)(?: \[(?<site>\d+)\])?)?$/)) {
if(x = line.match(/^\b(?<name>.*?)(?<value>(?:positive|negative|reactive|nonreactive|not detected|comment|collected - specimen in lab|test not performed))(?: (?<flag>L\*|L|H\*|H))?\s+(?:(?<unit>.{10}) (?<range>.*?)(?: \[(?<site>\d+)\])?)?$/i)) m = x;
if(x = line.match(/^\b(?<name>.*?)(?<value>(?:positive|negative|reactive|nonreactive|detected|not detected|comment|collected - specimen in lab|test not performed))(?: (?<flag>L\*|L|H\*|H))?\s+(?:(?<unit>.{10}) (?<range>.*?)(?: \[(?<site>\d+)\])?)?$/i)) m = x;
if((m.groups.range) && (m.groups.range.startsWith('Ref: '))) m.groups.range = m.groups.range.substring(5);
results.push(x = m.groups);
if((x.value === '') && (m = x.name.match(/^(?<name>.*?)(?<value>(?:[\d\.]+|positive|negative|reactive|not detected|comment|collected - specimen in lab|test not performed))\s*$/i))) {
if((x.value === '') && (m = x.name.match(/^(?<name>.*?)(?<value>(?:[\d\.]+|positive|negative|reactive|detected|not detected|comment|collected - specimen in lab|test not performed))\s*$/i))) {
x.name = m.groups.name;
x.value = m.groups.value;
}
for(var k in x) if(x[k]) x[k] = x[k] ? x[k].replace(/^\s+|\s+$/g, '') : undefined;
} else if(m = line.match(/^\b(?<name>.*?)(?<value>(?:[\d\.]+|positive|negative|reactive|nonreactive|not detected|comment|collected - specimen in lab|test not performed))\s*$/i)) {
} else if(m = line.match(/^\b(?<name>.*?)(?<value>(?:[\d\.]+|positive|negative|reactive|nonreactive|detected|not detected|comment|collected - specimen in lab|test not performed))(?: (?<flag>L\*|L|H\*|H))?\s*$/i)) {
results.push(x = m.groups);
for(var k in x) if(x[k]) x[k] = x[k] ? x[k].replace(/^\s+|\s+$/g, '') : undefined;
} else if(line.startsWith(' [')) {
@ -95,7 +95,7 @@ function lab_parse1default(data) {
value: x = (results.hasOwnProperty('SEGS') ? +results.SEGS.value : 0) + (results.hasOwnProperty('BANDS') ? +results.BANDS.value : 0),
flag: (x < 42.2 ? 'L' : x > 75.2 ? 'H' : undefined)
});
results.push(results['NEUTROPHIL#'] = {
if(results.WBC) results.push(results['NEUTROPHIL#'] = {
name: 'NEUTROPHIL#', unit: 'K/cmm', range: '1.4 - 6.5',
value: +(x = 0.01*x*results.WBC.value).toFixed(3),
flag: (x < 1.4 ? 'L' : x > 6.5 ? 'H' : undefined)
@ -107,7 +107,7 @@ function lab_parse1default(data) {
value: x = +results.EOSINO.value,
flag: (x < 0 ? 'L' : x > 10 ? 'H' : undefined)
});
results.push(results['EOSINOPHIL#'] = {
if(results.WBC) results.push(results['EOSINOPHIL#'] = {
name: 'EOSINOPHIL#', unit: 'K/cmm', range: '0.0 - 0.7',
value: +(x = 0.01*x*results.WBC.value).toFixed(3),
flag: (x < 0 ? 'L' : x > 0.7 ? 'H' : undefined)
@ -119,7 +119,7 @@ function lab_parse1default(data) {
value: x = +results.BASO.value,
flag: (x < 0 ? 'L' : x > 2 ? 'H' : undefined)
});
results.push(results['BASOPHIL#'] = {
if(results.WBC) results.push(results['BASOPHIL#'] = {
name: 'BASOPHIL#', unit: 'K/cmm', range: '0.0 - 0.2',
value: +(x = 0.01*x*results.WBC.value).toFixed(3),
flag: (x < 0 ? 'L' : x > 0.2 ? 'H' : undefined)
@ -131,7 +131,7 @@ function lab_parse1default(data) {
value: x = +results.MONOS.value,
flag: (x < 1.7 ? 'L' : x > 9.3 ? 'H' : undefined)
});
results.push(results['MONOCYTE#'] = {
if(results.WBC) results.push(results['MONOCYTE#'] = {
name: 'MONOCYTE#', unit: 'K/cmm', range: '0.11 - 0.59',
value: +(x = 0.01*x*results.WBC.value).toFixed(3),
flag: (x < 0.11 ? 'L' : x > 0.59 ? 'H' : undefined)
@ -143,7 +143,7 @@ function lab_parse1default(data) {
value: x = (results.hasOwnProperty('LYMPHS') ? +results.LYMPHS.value : 0) + (results.hasOwnProperty('ATYPICAL LYMPHOCYTES') ? +results['ATYPICAL LYMPHOCYTES'].value : 0),
flag: (x < 15 ? 'L' : x > 41 ? 'H' : undefined)
});
results.push(results['LYMPHOCYTE#'] = {
if(results.WBC) results.push(results['LYMPHOCYTE#'] = {
name: 'LYMPHOCYTE#', unit: 'K/cmm', range: '1.2 - 3.4',
value: +(x = 0.01*x*results.WBC.value).toFixed(3),
flag: (x < 1.2 ? 'L' : x > 3.4 ? 'H' : undefined)